Refactors configuration management (#4271)

* Adds flow types / Configuration interfaces

* Lets call it options

* Use a single interface to generate the configurations

* Translates options to definitions only if comments are set

* improves logic

* Moves objects around

* Fixes issue affecting logging of circular objects

* fixes undefined env

* Moves all defaults to defaults

* Adds back CLI defaults

* Restored defaults in commander.js

* Merge provided defaults and platform defaults

* Addresses visual nits

* Improves Config.js code

* Adds ability to pass the default value in trailing comments

* Load platform defaults from the definitions file

* proper default values on various options

* Adds ParseServer.start and server.start(options) as quick startup methods

* Moves creating liveQueryServer http into ParseServer.js

* removes dead code

* Adds tests to guarantee we can start a LQ Server from main module

* Fixes incorrect code regading liveQuery init port

* Start a http server for LQ if port is specified

* ensure we dont fail if config.port is not set

* Specify port

* ignore other path skipped in tests

* Adds test for custom middleware setting

* Refactors new Config into Config.get

- Hides AppCache from ParseServer.js, use Config.put which validates

* Extracts controller creation into Controllers/index.js

- This makes the ParseServer init way simpler

* Move serverURL inference into ParseServer

* review nits

spec/GridStoreAdapter.js

@@ -11,7 +11,7 @@ describe_only_db('mongo')("GridStoreAdapter",() =>{
   it("should properly instanciate the GridStore when deleting a file", (done) => {
 
     var databaseURI = 'mongodb://localhost:27017/parse';
-    var config = new Config(Parse.applicationId);
+    var config = Config.get(Parse.applicationId);
     var gridStoreAdapter = new GridStoreAdapter(databaseURI);
     var filesController = new FilesController(gridStoreAdapter);